cognac: rapid generation of concatenated gene alignments for phylogenetic inference from large, bacterial whole genome sequencing datasets

Table 1 Description of dataset and run statistics for the analysis in this study

	Number of genomes	Total number of coding sequences	Number of core genes	Alignment length (amino acid residues)	Run time (min)	Memory usage (GB)
Citrobacter	262	1,356,975	1864	590,749	14.78	3.4
Enterobacter	1947	9,575,752	1671	551,522	105.81	37.39
Escherichia	11,639	6,104,2774	1353	387,857	693.38	223.81
Klebsiella	9879	55,944,623	1957	631,196	980.95	184.86
Pluralibacter	24	131,798	1919	611,547	2.88	1.21
Proteus	207	806,518	1081	305,078	4.94	2.41
Pseudomonas	3051	19,509,251	1065	313,694	95.42	47.83
Serratia	520	2,673,835	1109	327,628	14.1	6.84

ISSN: 1471-2105