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Table 1 Total number and percentage of reads assigned to Bacteria, Viruses, and Protozoa for each analyzed sample

From: HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis

Sample-name

Raw reads

Non-hg19%

HOME-BIO shotgun Bacteria reads classified (%)

HOME-BIO shotgun Virus reads classified (%)

HOME-BIO shotgun Protozoa reads classified (%)

SRR1205226

62.241.508

10.36

4617 (0.07)

331 (0.01%)

177713 (2.76)

SRR1205227

83.273.796

8.79

259578 (3.54)

595 (0.01%)

237811 (3.25)

SRR1205228

57.336.562

16.43

5955 (0.06)

677 (0.01%)

218329 (2.32)

SRR1205230

75.597.642

11.50

52529 (0.6)

2496 (0.03)

262034 (3.01)

SRR1205231

76.089.590

10.60

5316 (0.07)

697 (0.01)

217939 (2.7)

SRR1205232

70.667.046

20.82

7420 (0.05)

1152 (0.01)

278959 (1.9)

SRR1206003

76.651.484

12.06

139334 (1.51)

736 (0.01)

264054 (2.86)

SRR1206005

77.326.222

15.57

8235 (0.07)

720 (0.01%)

264974 (2.2)

SRR1206007

50.795.748

22.63

3713 (0.03)

684 (0.01)

174687 (1.52)

SRR1206009

49.963.912

21.03

4393 (0.04)

491 (0.00)

202508 (1.93)

SRR1206011

41.425.332

28.19

3434 (0.03)

732 (0.01%)

196978 (1.69)

SRR1206012

52.047.446

25.38

5146 (0.04)

748 (0.01)

230780 (1.75)