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Table 1 Total number and percentage of reads assigned to Bacteria, Viruses, and Protozoa for each analyzed sample

From: HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis

Sample-name Raw reads Non-hg19% HOME-BIO shotgun Bacteria reads classified (%) HOME-BIO shotgun Virus reads classified (%) HOME-BIO shotgun Protozoa reads classified (%)
SRR1205226 62.241.508 10.36 4617 (0.07) 331 (0.01%) 177713 (2.76)
SRR1205227 83.273.796 8.79 259578 (3.54) 595 (0.01%) 237811 (3.25)
SRR1205228 57.336.562 16.43 5955 (0.06) 677 (0.01%) 218329 (2.32)
SRR1205230 75.597.642 11.50 52529 (0.6) 2496 (0.03) 262034 (3.01)
SRR1205231 76.089.590 10.60 5316 (0.07) 697 (0.01) 217939 (2.7)
SRR1205232 70.667.046 20.82 7420 (0.05) 1152 (0.01) 278959 (1.9)
SRR1206003 76.651.484 12.06 139334 (1.51) 736 (0.01) 264054 (2.86)
SRR1206005 77.326.222 15.57 8235 (0.07) 720 (0.01%) 264974 (2.2)
SRR1206007 50.795.748 22.63 3713 (0.03) 684 (0.01) 174687 (1.52)
SRR1206009 49.963.912 21.03 4393 (0.04) 491 (0.00) 202508 (1.93)
SRR1206011 41.425.332 28.19 3434 (0.03) 732 (0.01%) 196978 (1.69)
SRR1206012 52.047.446 25.38 5146 (0.04) 748 (0.01) 230780 (1.75)