Species | Reference | Bioproject | QC reads | Sm motif regex | SLs (detected | expected) | Novel SLs | SL RNA genes (detected | expected) |
---|---|---|---|---|---|---|---|
Caenorhabditis elegans | GCF_000224145.3 | PRJNA270896 | 150,041,952 | .{40,55}AC?T{4,6}G | 12 | 12 | – | 28 | 28 |
 | GCF_000002985.6a | PRJEB28364 | 45,443,137 | .{40,55}AC?T{4,6}G | 12 | 12 | – | 28 | 28 |
Caenorhabditis briggsae | PRJNA10731.WBPS5 | PRJNA104933 | 21,265,790 | .{20,60}AT{4,6}G | 2 | 7 | – | 11 | 18 +  |
 |  | PRJNA489172 | 78,497,095 | .{20,60}AT{4,6}G | 6 | 7 | – | 26 | 18 +  |
 |  | PRJNA231838 | 59,271,467 | .{20,60}AT{4,6}G | 7 | 7 | – | 27 | 18 +  |
Pristionchus pacificus | Hybrid1 | SRP039388 | 81,387,873 | .{40,55}[AG]T{4,6}[AG] | 7 | 11 | 6 | 210 | 203 |
 | GCA_000180635.3 | PRJNA338247 | 330,856,071 | .{40,55}[AG]T{4,6}[AG] | 6 | 11 | 10 | 660 | 203 |
Meloidogyne hapla | PRJNA29083.WBPS14 | PRJNA229407 | 169,404,394 | .{30,80}AT{4,6}G | 5 | 5 | 10 | 14 | ? |
 |  | PRJEB14142 | 62,113,573 | .{30,80}AT{4,6}G | 5 | 5 | 9 | 13 | ? |
Trichinella spiralis | PRJNA12603.WBPS10 | PRJNA510020 | 201,164,867 | .{20,50}AT{4,6}G | 15 | 15 | – | 22 | 48 |
Trichuris muris | PRJEB126.WBPS15 | PRJEB1054 | 115,460,947 | .{25,50}AT{4,6}G | 13 | 13 | 3 | 20 | 13 |
Prionchulus punctatus | de novo Trinity1 | PRJEB7585 | 71,087,651 | .{25,60}AC?T{4,6}G | 2 | 6 | – | 2 | ? |
Ciona intestinalis | GCF_000224145.3_KH | PRJNA396771 | 108,760,969 | .{2,25}AGCTTTGG | 1 | 1 | – | 11 | 15 |
 |  |  |  | .{20,50}AT{4,6}G | 1 | 1 | 1 | 1 | 15 |
 |  | PRJNA297221 | 49,713,049 | .{2,25}AGCTTTGG | 1 | 1 | – | 11 | 15 |
 |  | PRJNA433724 | 19,072,215 | .{2,25}AGCTTTGG | 1 | 1 | – | 11 | 15 |
 |  | PRJNA376667 | 194,089,029 | .{2,25}AGCTTTGG | 1 | 1 | 2 | 14 | 15 |
 |  |  |  | .{20,50}AT{4,6}G | 1 | 1 | 1 | 3 | 15 |
Hydra vulgaris | Hm105 | PRJNA497966 | 125,523,578 | .{10,35}[AG]ATTTT[CG][AG] | 2 | 12 | 2 | 3 | ? |
 |  | PRJNA641135 | 35,234,240 | .{10,35}[AG]ATTTT[CG][AG] | 3 | 12 | 2 | 4 | ? |
Schistosoma mansoni | PRJEA36577.WBPS14 | PRJNA225599 | 38,015,650 | .{10,30}AGTTTTCTTTGG | 1 | 1 | – | 110 | ? |