CeNet Omnibus: an R/Shiny application to the construction and analysis of competing endogenous RNA network

BMC Bioinformatics

Table 1 The comparison between CeNet Omnibus and CeRNASeek

Items		CeNet Omnibus	CeRNASeek
Environment	Language	R	R
Environment	Operation interface	web-base	command line
Functionality	Data processing	Yes	No
	Network Construction	PCC, MS, MI, CMI, LA, and self define	Ratio, HyperT, HyperC, SC, CMI, and Cernia
	Network Visualization	Yes	Yes
	Network topological Property	Yes	No
	Network module	Yes	No
	Enrichment analysis	Yes	Yes
	Survival analysis	Yes	Yes
Feature	Usability	GUI with document tutorial	R function with document tutorial
	Efficiency	Yes	No
	Expandability	Yes	No

ISSN: 1471-2105