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Fig. 1 | BMC Bioinformatics

Fig. 1

From: CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets

Fig. 1

Overview. A schematic diagram of the CHARTS pipeline. Public scRNA-seq data sets are collected and analyzed with a custom pipeline. This pipeline computes clusters, malignancy scores, dimension reduction transformations, cell type annotations, gene set enrichment scores, and differentially expressed genes for each cluster. Results are stored in a backend database and are accessed from the frontend web application

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