A base measure of precision for protein stability predictors: structural sensitivity

BMC Bioinformatics

Table 1 List of proteins studied in this work

Name	Abbreviation	CATH	Length (N)	PDB IDs	Average resolution	STDEV resolution
Human acidic fibroblast growth factor	FGF	β	513	2AFG, 3UD7, 1JQZ, 1RG8	1.88	0.71
Barnase	Bar	α + β	110	1BNI, 1B2X, 1A2P, 1X1X	1.32	0.35
Hen Lyzozyme	Lyz	α	129	2LYZ, 2VB1, 3LZT, 5LIN, 5HNL	1.50	0.73
Beta Lactamase	BLac	α + β	263	1ZG4, 1BTL, 4OQG	1.31	0.44
Alpha Amylase	AAmy	α + β	453	1AQM, 1AQH, 1B0I	2.08	0.28
Ubiquitin	UBQ	α + β	76	1UBQ, 6Q00, 4XOK, 4XOL, 4XOF	1.78	0.83
Bovine pancreatic trypsin inhibitor	BPTI	NoSS	58	1BPI, 3LDJ, 9PTI	1.34	0.32
Carbonic anhydrase	CAH	α + β	258	1CAH, 3KS3, 6PEA, 1CA2, 1HCA	1.69	0.56
Hemoglobin	Hem	α	574	4HHB, 2DN2, 2HBS, 1COH	1.39	0.69
Ribonuclease A	Rnase	α + β	108	6ETK, 1KF4, 2BLP, 1C0B, 1JVV	1.43	0.56
Thaumatin	Thm	β	207	5AVG, 1THI, 1PP3	1.32	1.16
Human serum albumin	HSA	α	578	4G03, 1AO6, 4K2C	2.65	0.53
Turkey lysozyme	MLyz	α	129	2LZ2, 3LZ2, 135L	2.00	0.62
T-cell glycoprotein	TGly	β	363	1WIQ, 1WIP, 1WIO	4.3	0.61
Uracil-DNA Glycosylase	UGlc	α + β	223	2OYT, 2OXM, 1EMH, 1AKZ	1.37	0.40
Beta-secretase 1	BACE1	β	370	2ZHS, 2ZHT, 2ZHV	2.30	0.42
Toxic shock toxin 1	TST1	β	194	5TSS, 2TSS, 2QIL	2.34	0.48
Human Procathepsin	HPC	α + β	317	1PBH, 2PBH, 3PBH	3.01	0.44
Gamma-B Crystallin	GBC	β	174	4GCR, 1GCS, 1AMM	1.56	0.41
Thermomyces Lanuginosa Lipase	TLL	α + β	269	1TIB, 1DTE, 1DT3	2.26	0.39
Spasmolytic polypeptide	SPP	NoSS	105	1POS, 1PSP, 2PSP	1.35	0.35
Human neonatal Fc receptor	FCR	β	263	3M17, 3M1B, 5BJT	2.37	0.32
Cyclophilin A	CycA	β	164	4YUJ, 5F66, 5KUL	1.42	0.28
Lysin	Lys	α	131	1LIS, 2LIS, 5II9	1.79	0.39
Tryparedoxin I	TRR	α + β	143	1EWX, 1O7U, 1QK8	1.53	0.16

CATH secondary structure class, PDB IDs, and the average and standard deviation among all the resolution values

ISSN: 1471-2105