Table 5 ContigExtender results on Human metagenome datasets using MetaSPAdes as seed contigs
From: ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
Contig ID | Library | Meta SPAdes (bp) | Contig Extender (bp) | Gained length (bp) | Gained (%) | Aligned (bp) | Aligned (%) | Genome | Genome size (bp) | Gained genome (%) |
|---|---|---|---|---|---|---|---|---|---|---|
1 | Amazon-4B | 7560 | 10,034 | 2474 | 33 | 7493 | 75 | Norwalk_virus (NC_040876.1) | 7521 | 33 |
2 | Amazon-17D | 7912 | 8329 | 417 | 5 | 7862 | 94 | Husavirus_sp. (NC_032480.1) | 8856 | 5 |
3 | Amazon-3D | 1537 | 7676 | 6139 | 399 | 7678 | 100 | Husavirus_sp. (NC_032480.1) | 8856 | 69 |
4 | Amazon-3D | 3776 | 7530 | 3754 | 99 | 7532 | 100 | Husavirus_sp. (NC_032480.1) | 8856 | 42 |
5 | Amazon-3D | 2165 | 7530 | 5365 | 248 | 7532 | 100 | Husavirus_sp. (NC_032480.1) | 8856 | 61 |
6 | Amazon-S10-CNI-055 | 1671 | 3258 | 1587 | 95 | 3242 | 100 | Betapapillomavirus_1 (NC_001531.1) | 7746 | 20 |
7 | Amazon-S10-CNI-055 | 1710 | 3258 | 1548 | 91 | 3242 | 100 | Betapapillomavirus_1 (NC_001531.1) | 7746 | 20 |
8 | Amazon-6D | 2151 | 2772 | 621 | 29 | 2681 | 97 | Human_cosavirus (NC_023984.1) | 7802 | 8 |
9 | 12-110034-veqrpcr | 2339 | 5237 | 2898 | 124 | 5233 | 100 | Hepacivirus_C(NC_004102.1) | 9646 | 30 |
10 | 47210-feces | 2436 | 4637 | 2201 | 90 | 4444 | 96 | Escherichia_virus_AKFV33 (NC_017969.1) | 108,853 | 2 |
11 | 47210-feces | 2436 | 3572 | 1136 | 47 | 3572 | 100 | Escherichia_virus_T5 (NC_005859.1) | 121,750 | 1 |
12 | 12-110034-veqrpcr | 2424 | 3157 | 733 | 30 | 3121 | 99 | Hepacivirus_C (NC_004102.1) | 9646 | 8 |
13 | 12-110,034-veqrpcr | 2424 | 3156 | 732 | 30 | 3121 | 99 | Hepacivirus_C (NC_004102.1) | 9646 | 33 |