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Table 4 The hyperparameter sets considered during the model fitting process

From: A new method for exploring gene–gene and gene–environment interactions in GWAS with tree ensemble methods and SHAP values

Set

\(\varvec{\eta }\)

colsample_bytree

Subsample

colsample_bylevel

max_depth

1

0.1

0.3

0.3

0.3

2

2

0.1

0.5

0.5

0.5

2

3

0.1

0.5

0.5

1

2

4

0.1

0.8

0.8

0.8

2

5

0.1

1

1

1

2

6

0.05

0.5

0.5

0.5

2

7

0.05

0.8

0.8

0.8

2

8

0.2

0.5

0.5

0.5

2

9

0.1

0.3

0.3

0.3

3

10

0.1

0.5

0.5

0.5

3

11

0.1

0.5

0.5

1

3

12

0.1

0.8

0.8

0.8

3

13

0.1

1

1

1

3

14

0.05

0.5

0.5

0.5

3

15

0.05

0.8

0.8

0.8

3

16

0.2

0.5

0.5

0.5

3