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Table 1 Rank prediction of gene targets in C. elegans and human T-cell data sets by DeltaNeTS+, TSNI, DeMAND, and log2FC magnitudes. The ranking is computed based on the magnitude of target scores for all genes in the GRN from each algorithm (see Methods)

From: DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks

 

Experiment 1

Experiment 2

Experiment 3

C. elegans data set

 Methods

mex-3

skn-1

pie-1

pal-1

pie-1

 DeltaNeTS+

9

44

9

2

2

 TSNI

11

5086

13

7

13

 DeMAND

38

15,150

23

3

38

 log2FC

3

8623

4

304

3

 

Experiment 1

Experiment 2

Human T-cell data set

 Methods

STAT6

STAT6

 DeltaNeTS+

1

1

 TSNI

1

22

 DeMAND

1

2

 log2FC

1

4