Fig. 4
From: CytoTree: an R/Bioconductor package for analysis and visualization of flow and mass cytometry data
Pseudotime estimation and the identification of intermediate states in the hematopoiesis of different cell lineages. a tSNE visualization of the cells in each branch. The cells are colored according to the branches identified in use case 1. b tSNE visualization of the cells according to the hematopoietic differentiation process identified in use case 1. The cells are colored according to the pseudotimes calculated in CytoTree. c Density plot of the pseudotime for different cell lineages. d Heatmap plot of the intermediate state cells along with the pseudotime progression. Each column represents a cell. The expression values of the intermediate cells of each lineage are scaled by row and visualized using the z-score