TY - JOUR AU - Martin, Samuel AU - Leggett, Richard M. PY - 2021 DA - 2021/03/16 TI - Alvis: a tool for contig and read ALignment VISualisation and chimera detection JO - BMC Bioinformatics SP - 124 VL - 22 IS - 1 AB - The analysis of long reads or the assessment of assembly or target capture data often necessitates running alignments against reference genomes or gene sets. The aligner outputs are often parsed automatically by scripts, but many kinds of analysis can benefit from the understanding that can follow human inspection of individual alignments. Additionally, diagrams are a useful means of communicating assembly results to others. SN - 1471-2105 UR - https://doi.org/10.1186/s12859-021-04056-0 DO - 10.1186/s12859-021-04056-0 ID - Martin2021 ER -