Fig. 2From: Alvis: a tool for contig and read ALignment VISualisation and chimera detectionA contig alignment diagram of chimeric A. thaliana reads. Note that the read ERR2173373.14390 has two alignments, one to each end of the chloroplast reference sequence. Since chloroplast DNA is usually circular, this may be a relic of using linear sequence to represent circular DNA, and not a true chimera. Figure generated with Alvis v1.1Back to article page