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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Alvis: a tool for contig and read ALignment VISualisation and chimera detection

Fig. 3

Example alignments. Read 1 is classified as chimeric. Read 2 is not classified as chimeric because the alignments overlap. This case is ambiguous—if the overlap is small, or there is sequence shared between Reference 1 and Reference 2, then this read could be chimeric. Read 3 is not classified as chimeric because the coverage of the alignments is too small. Read 4 is not classified as chimeric because the alignment to Reference 1 is too small. Figure generated with Alvis v1.2

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