From: Alvis: a tool for contig and read ALignment VISualisation and chimera detection
 | Genome alignment | Read alignment | Input formats | Interactive viewer | Output formats | Platforms supported |
---|---|---|---|---|---|---|
Alvis | Yes | Yes | BLAST, MUMmer, SAM, PAF, PSL | No | TeX(PDF), SVG | Java (Linux, Mac, Windows) |
Artemis | Yes | Yes | BAM | Yes | – | Java 9 only |
BLAST Web | No | Yes | – | No | Webpage | Browser based |
Circos | Yes | Yes | Bespoke format | No | PNG, SVG | Linux, Mac, Windows |
Icarus | Yes | No | – | Yes | – | Linux, Mac |
Mauve | Yes | No | – | Yes | Linux, Mac, Windows | |
MUMmerplot | Yes | No | MUMmer | No | Postscript, X11 | Linux, Mac |