Function | Command | Description |
---|---|---|
NRY haplogroup classification | Classify | Classify NRY haplogroups from BAM or VCF file |
Clustering analysis | Cluster | Perform clustering analysis for NRY haplogroups |
Phylogeny analysis | Phylo | Perform phylogeny analysis for NRY haplogroups |
Y-STR genotyping | Genostr | Genotype Y-STRs from BAM or VCF indels |
Network analysis | Net | Perform network analysis for Y-STR haplotypes |
Statistical analysis | Stat | Perform statistical analysis for Y-STR haplotypes |
Time estimation | Time | Estimate NRY haplogroup divergence time |
Tmrca | Estimate TMRCA of Y-STR haplotypes |