Function | Method or Statistics | Reference |
---|---|---|
Clustering Analysis | Principal component analysis (PCA) | [23] |
Multidimensional scaling (MDS) | ||
Phylogeny Analysis | Maximum parsimony (MP) | |
Identity by state (IBS) | ||
Network Analysis | Median-joining (MJ) | [30] |
Statistical Analysis | Haplotype diversity (HD) | [31] |
Mean pairwise distance (MPD) | [32] | |
Fixation index (Fst) | [33] | |
Genetic diversity (Gst) | ||
Analysis of molecular variance (AMOVA) | [36] | |
Haplogroup prediction from Y-STRs | [37] | |
Time Estimation | Mcmctree in PAML | [21] |
Rho statistics | [38] | |
The average squared difference (ASD) |