Tool | Version | Programming Language | Supported Input Format | Sample Input form | Number of Markers | Supported Reference |
---|---|---|---|---|---|---|
Y-LineageTracker | 1.3.0 | Python | VCF, BAM/CRAM | Multiple | 74, 570 | hg19, hg38 |
HaploGrouper | 1.0 | Python | VCF | Multiple | 71, 406 | hg19, hg38 |
AMY-Tree | 2.0 | Perl | VCF-like | Single | 5, 925 | hg18, hg19 |
Yleaf | 2.2 | Python | FASTQ, BAM/CRAM | Single | 65, 459 | hg19, hg38 |
clean-tree | 2.0 | Python, R | BAM | Single | 539 | hg19 |