Instance-based error correction for short reads of disease-associated genes

Zhang, Xuan; Liu, Yuansheng; Yu, Zuguo; Blumenstein, Michael; Hutvagner, Gyorgy; Li, Jinyan

doi:10.1186/s12859-021-04058-y

BMC Bioinformatics

Table 4 Performance comparison. Instance-based approach vs global approach

From: Instance-based error correction for short reads of disease-associated genes

	On single-end reads						On paired-end reads
	Coral_g	Coral	BFC_g	BFC	Bcool_g	Bcool	Coral_g	Coral	BFC_g	BFC	Bcool_g	Bcool
Precision (\(\%\))
g1	97.80	95.95	85.93	91.91	90.21	93.01	97.97	94.46	92.86	90.96	91.12	89.82
g2	99.66	99.65	94.30	100	94.70	94.70	92.43	97.39	99.00	100	98.18	98.18
g3	98.81	92.19	94.58	93.90	95.48	95.48	98.41	93.49	98.04	94.10	97.32	97.97
g4	98.97	94.86	96.45	97.34	96.30	96.30	98.61	95.19	98.02	98.18	98.00	98.00
g5	98.68	100	100	100	98.01	98.68	96.87	90.16	91.03	95.00	95.02	96.02
g6	93.33	93.36	77.63	91.64	87.73	87.73	92.97	92.30	89.41	95.35	91.49	91.49
g7	99.02	99.25	90.27	99.87	93.79	93.79	95.77	98.57	92.39	96.02	95.81	95.81
AVE	98.04	96.47	91.31	96.38	93.75	94.24	96.15	94.51	94.39	95.66	95.28	95.33
Recall (\(\%\))
g1	72.48	91.06	75.91	78.64	76.99	79.38	74.61	93.92	92.94	95.04	79.29	86.78
g2	96.99	95.65	82.94	71.91	89.63	89.63	95.60	97.39	96.26	95.93	96.42	96.42
g3	88.00	97.07	75.62	76.00	89.23	89.23	90.19	97.92	96.65	95.49	92.47	92.75
g4	90.26	96.97	78.03	78.19	91.25	91.25	91.47	97.05	96.76	97.75	93.85	93.85
g5	98.68	61.84	79.61	69.74	97.37	98.03	98.80	90.16	90.67	94.44	94.74	95.73
g6	67.09	96.44	77.04	76.91	79.34	79.34	68.96	97.20	94.00	96.65	81.10	81.10
g7	82.35	96.81	80.16	71.52	86.53	86.53	86.31	98.41	93.78	95.48	89.78	89.78
AVE	85.12	90.83	78.47	76.13	87.19	87.63	86.56	96.01	94.44	95.83	89.66	90.91
Gain (\(\%\))
g1	71.32	87.95	63.48	71.72	68.63	79.38	73.79	89.66	85.79	85.60	71.56	86.78
g2	96.98	95.64	77.93	71.91	84.62	89.63	88.93	95.71	95.28	95.93	94.63	96.42
g3	87.66	89.56	71.29	71.06	85.01	89.23	89.57	92.15	94.72	89.50	89.92	92.75
g4	90.15	92.76	75.16	76.06	87.75	91.25	91.24	93.29	94.81	95.94	91.93	93.85
g5	97.37	61.84	79.61	69.74	95.39	98.03	96.77	81.04	81.73	89.47	89.77	95.73
g6	63.58	91.32	54.85	69.90	68.24	79.34	64.52	91.23	82.87	91.94	73.56	81.10
g7	82.05	96.79	71.52	71.43	80.80	86.53	83.40	98.39	86.05	91.52	85.86	89.78
AVE	84.16	87.98	70.55	73.11	81.49	87.63	84.03	91.64	88.75	91.42	85.32	90.91

AVE indicates the average score over the seven genes. Bold font indicates the better result compared methods with its _g version

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