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Table 7 Experiment 4-File size overhead: Type 2 datasets FASTQ files: The Table Legend is as in Table 5

From: FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy

Dataset

BZIP2

LZ4

ZSTD

DSRC

DSRC

Fqzcomp

SPRING

SA vs HS

SA vs HS

SA vs HS

SA vs HS

SA vs HU

SA vs HU

SA vs HU

H. Sapiens 1 (cov. 1.6x)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 4.76\%\)

\(\sim 10.00\%\)

H. Sapiens 2 (cov. 14.4x)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 1.41\%\)

\(\sim 43.71\%\)

H. Sapiens 3 (cov. 26.6x)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 0\%\)

\(\sim 1.41\%\)

\(\sim 154.43\%\)