From: FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy
Dataset | BZIP2 | LZ4 | ZSTD | DSRC | DSRC | Fqzcomp | SPRING |
---|---|---|---|---|---|---|---|
SA vs HS | SA vs HS | SA vs HS | SA vs HS | SA vs HU | SA vs HU | SA vs HU | |
H. Sapiens 1 (cov. 1.6x) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 4.76\%\) | \(\sim 10.00\%\) |
H. Sapiens 2 (cov. 14.4x) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 1.41\%\) | \(\sim 43.71\%\) |
H. Sapiens 3 (cov. 26.6x) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 1.41\%\) | \(\sim 154.43\%\) |