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Table 3 The list of gene module gold standard for three SCODE networks

From: ModularBoost: an efficient network inference algorithm based on module decomposition

Network

module

Genes

PrE

module 1

XBP1 GATA6 MYBL2 RHOX6 JUN

module 2

ETS1 EGR1 POU5F1 ELF3

module 3

DNMT3A SIX1 SMAD7

module 4

EPAS1 BHLHE40 POU5F1

MEF

module 1

HMGA2 ASCL1 FOS ATF3 ETS1 PRRX1 JUN NFIC FOSB

module 2

FOS EBF1 PLAGL1 FOSB SOX9 KLF4

module 3

NFIC NFIA NR2F2

DE

module 1

CDX1 JUND

module 2

PRDM1 HAND1 FOXF1 HOXB6 SOX5 SOX17 TCF7 MAF

module 3

OTX2 NFIB ZIC3 CDX1 LEF1 ZFX TFAP2A ZEB1

module 4

GATA6 T EOMES GATA4 SOX2 MSX1 PITX2 POU5F1 NANOG

module 5

T CDX1 JUND ZFP42 ARID3A GATA6 HAND1 ZFX