Eye-color and Type-2 diabetes phenotype prediction from genotype data using deep learning methods

BMC Bioinformatics

Table 6 Table summarizes the accuracy of ANN, GRU, BILSTM, LSTM, and 1DCNN model for 3 SNPs

Model, SNPs = 3	Activation	Dropout	Optimizer	Batchsize	Epochs	Validation	Accuracy
ANN	Sigmoid	0.2	Adam	1	10	0.2	0.88
	Sigmoid	0.2	Adam	10	20	0.4	0.89
	Relu	0.3	RMSprop	15	50	0.3	0.89
	Relu	0.3	SGD	1	50	0.2	0.89
GRU	Sigmoid	0.2	Adam	1	10	0.2	0.895
GRU	Sigmoid	0.2	RMSprop	10	50	0.3	0.895
BILTM	Sigmoid	0.2	Adam	1	10	0.2	0.895
BILTM	Sigmoid	0.3	RMSprop	10	100	0.3	0.895
LSTM	Sigmoid	0.2	Adam	1	10	0.2	0.9
1DCNN	Sigmoid	0.2	Adam	1	20	0.2	0.88
	Sigmoid	0.2	Adam	1	50	0.2	0.89
	Softmax	0.3	RMSprop	20	100	0.3	0.89
	Softmax	0.2	Adam	20	50	0.2	0.89
	Relu	0.3	RMSprop	15	50	0.4	0.89

ISSN: 1471-2105