Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

BMC Bioinformatics

Table 1 Sample description

Species	Ploidy	Library type	Tissue	Selection	Strandness	Read length	Average M reads after preprocessing
Acer platanoides	Diploid	Paired-end	Leaves	poly-A	RF	150 bp	25.1
Acer pseudoplatanus	Tetraploid	Paired-end	Leaves	poly-A	RF	150 bp	29.1
Vaccinium arboreum	Diploid	Paired-end	Roots	rRNA depletion	FR	101 bp	12.9
Vaccinium corymbosum	Tetraploid	Paired-end	Roots	rRNA depletion	FR	101 bp	26.9
Arabidopsis thaliana	Diploid	Paired-end	Aerial parts	rRNA depletion*	non*	150 bp	21.6
Arabidopsis thaliana	Tetraploid	Paired-end	Aerial parts	rRNA depletion*	non*	150 bp	21.4

ISSN: 1471-2105