Table 1 Simulation results with MA data using linear model and the target heritability \(h^2 = 0.5\)
100 causal SNPs, \(\sigma _{\varepsilon }^2 = 1\) | 5000 causal SNPs, \(\sigma _{\varepsilon }^2 = 1\) | 100 causal SNPs from 3 genes, \(\sigma _{\varepsilon }^2 = 1\) | |
|---|---|---|---|
h2aprx | 0.5004 (.0245) | 0.5085 (.0256) | 0.4966 (.0227) |
Enet | 0.3585 (.0348) | 0.3770 (.0500) | 0.3546 (.0386) |
HERRA | 0.5619 (.0507) | 0.5583 (.0366) | 0.5204 (.0483) |
B_herra | 0.5551 (.0350) | 0.5588 (.0294) | 0.5184 (.0371) |
GCTA | 0.3592 (.0309) | 0.3005 (.0270) | 0.3338 (.0430) |