Table 3 Evaluation summary of assemblies using SOAPdenovo scaffolds and ONT contigs as input for HG001

Human (SOAPdenovo scaffolds)

 Number of scaffolds (> 1000 bp)

48,278

54,193

79,435

80,400

 Largest scaffold (bp)

35,605,665

59,127,605

796,758

10,897,000

 Total assembled length (bp)

3,115,923,941

3,094,665,921

2,659,717,897

2,713,878,926

 NG50 (bp)

9,113,260

2,346,521

54,245

468,461

 NGA50 (bp)

1,510,911

101,813

44,836

59,899

 Relocation

2373

32,588

1104

20,906

 Inversion

105

1866

39

110

 Translocation

3694

2926

875

4060

 Number of misassemblies

6172

37,380

218

25,076

Human (ONT contigs)

 Number of scaffolds (> 1000 bp)

807

1051

1474

876

 Largest scaffold (bp)

90,148,984

109,245,684

45,826,758

170,045,596

 Total assembled length (bp)

2,829,830,390

2,828,106,943

2,823,722,824

2,823,836,148

 NG50 (bp)

21,779,983

26,579,775

8,806,572

39,604,458

 NGA50 (bp)

1,578,910

1,592,388

1,481,592

1,574,345

 Relocation

4378

4182

3962

4266

 Inversion

64

63

60

61

 Translocation

1575

1453

1383

1607

 Number of misassemblies

6017

5698

5405

5934