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Table 2 Harvestman applied to the five-year disease-free survival endpoint over a full knowledge graph (GO + Genomic) and both of its constituent components (GO, Genomic)

From: Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data

Knowledge graph

Selected count

AUC

GO + GENOMIC

11,671

0.68

GO

107

0.55

Genomic

11,497

0.68

  1. Values shown are averaged over five-fold cross validation, and AUC was obtained from a logistic regression classifier
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BMC Bioinformatics

ISSN: 1471-2105

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