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Table 1 Experimental results (%) of link prediction task on dataset

From: Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction

Model P@1000 R@1000 P@10,000 R@10,000 P@20,000 R@20,000
Metapath2vec 99.60 ± 0.202 3.81 ± 0.301 95.40 ± 0.202 36.46 ± 0.023 82.65 ± 0.011 63.18 ± 0.022
HIN2vec 99.60 ± 0.051 3.81 ± 0.241 74.22 ± 0.102 28.37 ± 0.043 58.99 ± 0.031 45.09 ± 0.021
HERec 63.30 ± 0.063 2.42 ± 0.182 72.58 ± 0.035 27.74 ± 0.061 71.55 ± 0.102 54.69 ± 0.100
GAT 94.90 ± 0.171 3.62 ± 0.304 93.67 ± 0.043 35.80 ± 0.102 90.45 ± 0.211 69.14 ± 0.117
HAN 99.60 ± 0.093 3.81 ± 0.301 99.16 ± 0.202 37.90 ± 0.306 96.28 ± 0.130 73.59 ± 0.317
MAGNN 99.30 ± 0.122 3.80 ± 0.103 98.11 ± 0.351 37.50 ± 0.203 94.99 ± 0.033 72.61 ± 0.091
FactorHNE 99.70 ± 0.062 3.81 ± 0.202 99.07 ± 0.121 37.87 ± 0.082 96.91 ± 0.072 74.08 ± 0.145
  1. Bold values are the highest value of all baselines
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