Table 1 Experimental results (%) of link prediction task on dataset
From: Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction
Model | P@1000 | R@1000 | P@10,000 | R@10,000 | P@20,000 | R@20,000 |
|---|---|---|---|---|---|---|
Metapath2vec | 99.60 ± 0.202 | 3.81 ± 0.301 | 95.40 ± 0.202 | 36.46 ± 0.023 | 82.65 ± 0.011 | 63.18 ± 0.022 |
HIN2vec | 99.60 ± 0.051 | 3.81 ± 0.241 | 74.22 ± 0.102 | 28.37 ± 0.043 | 58.99 ± 0.031 | 45.09 ± 0.021 |
HERec | 63.30 ± 0.063 | 2.42 ± 0.182 | 72.58 ± 0.035 | 27.74 ± 0.061 | 71.55 ± 0.102 | 54.69 ± 0.100 |
GAT | 94.90 ± 0.171 | 3.62 ± 0.304 | 93.67 ± 0.043 | 35.80 ± 0.102 | 90.45 ± 0.211 | 69.14 ± 0.117 |
HAN | 99.60 ± 0.093 | 3.81 ± 0.301 | 99.16 ± 0.202 | 37.90 ± 0.306 | 96.28 ± 0.130 | 73.59 ± 0.317 |
MAGNN | 99.30 ± 0.122 | 3.80 ± 0.103 | 98.11 ± 0.351 | 37.50 ± 0.203 | 94.99 ± 0.033 | 72.61 ± 0.091 |
FactorHNE | 99.70 ± 0.062 | 3.81 ± 0.202 | 99.07 ± 0.121 | 37.87 ± 0.082 | 96.91 ± 0.072 | 74.08 ± 0.145 |