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Table 2 Pathway enrichment results for nearby co-expressed genes with miRNAs

From: NoRCE: non-coding RNA sets cis enrichment tool

Pathway ID

Pathway term

p-value

GeneRatio

BGRatio

EGNo

ncGeneList

R-HSA-9006934

Signaling by receptor tyrosine kinases

0.0006

8/44

473/10654

8

hsa-mir-199b, hsa-mir-214, hsa-mir-3934, hsa-mir-455, hsa-mir-483, hsa-mir-141, hsa-mir-338, hsa-mir-3689a

R-HSA-422475

Axon guidance

0.0017

8/44

553/10654

8

hsa-mir-199b, hsa-mir-214, hsa-mir-4684, hsa-mir-585, hsa-mir-95, hsa-mir-150, hsa-mir-3689a

R-HSA-1266738

Developmental biology

0.0327

9/44

1097/10654

9

hsa-mir-199b, hsa-mir-214, hsa-mir-4684, hsa-mir-585, hsa-mir-935, hsa-mir-95, hsa-mir-150, hsa-mir-3689a

  1. The GeneRatio is computed by dividing the overlapping with the coding genes with the functional gene set to the number of all protein-coding genes within the input set neighbourhood. The BGRatio column represents the ratio of the number of genes found in the enriched GO term set to the size of the background gene set. The EGNo refers to the size of the overlap between the corresponding GO term gene set and the neighboring coding gene set. ncGeneList column contains ncRNA genes that are enriched with the corresponding GO-term