Skip to main content
Fig. 3 | BMC Bioinformatics

Fig. 3

From: To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography

Fig. 3

a Number of MOTUs obtained at different values of d using SWARM. Total number of MOTUs (dark green) and of MOTUs with two or more sequences (light green) are represented (note different Y-axes). b Density plots (note quadratic scale) showing the distribution of number of differences between different clusters (inter-MOTU, red) and sequences within clusters (intra-MOTU, blue) obtained by SWARM for selected values of the parameter d (1, 9, 13, 14, 20 and 30)

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us