Table 4 Memory usage for major data structures (MB)
From: GPrimer: a fast GPU-based pipeline for primer design for qPCR experiments
| Â | Mouse | Human | ||
|---|---|---|---|---|
| Â | \(k=1\) | \(k=2\) | \(k=1\) | \(k=2\) |
primerH | 9808 | Â | 11,664 | Â |
suffixH | 5530 | Â | 5125 | Â |
seedH | 3649 | 1812 | 3390 | 1721 |
arraysC1 | 34,308 | 64,412 | 40,191 | 77,200 |
arraysC3+output | 1979 | 3921 | 1967 | 2848 |
FPoffset+FP+Fpos | 1431 | Â | 1936 | Â |
RPoffset+RP+Rpos | 1430 | Â | 1937 | Â |
score+scoreoffset | 112,026 | Â | 143,407 | Â |