Fig. 3

Performance of the generalized BASS grammars on bacterial and fungal test motifs from NLR proteins. a Recall at the false positive rates of \(1e{-}2\) (pale green) and \(1e{-}3\) (dark green) for BASS1-10 motifs with regard to the maximum number of variables in grammars (l: lexical, s: structural) and presence/absence of the contact constraints (\(\pm cnt\)). Vertical bars indicate recall ranges achieved using single grammars in six runs. Short horizontal bars indicate recall obtained using the score averaging scheme. b Recall at the false positive rates of \(1e{-}3\) obtained using the score averaging scheme for each BASS class separately and for the three fungal amyloid signaling motifs