Table 1 Statistics for the concept annotations in the training (67-document) and evaluation (30-document) data sets for all ontologies
Ontology | # training set annotations | avg/median # training set annotations per article | # evaluation set annotations | Avg/median # evaluation set annotations per article |
|---|---|---|---|---|
ChEBI | 4548 | 68/45 | 2200 | 73/45 |
ChEBI_EXT | 11,915 | 178/142 | 5248 | 175/142 |
CL | 4043 | 60/32 | 1749 | 58/32 |
CL_EXT | 6276 | 94/64 | 2872 | 96/64 |
GO_BP | 9280 | 139/108 | 3681 | 123/108 |
GO_BP_EXT | 13,954 | 208/158 | 5847 | 195/158 |
GO_CC | 4075 | 61/33 | 1184 | 39/33 |
GO_CC_EXT | 8495 | 127/91 | 3217 | 107/91 |
GO_MF | 375 | 6/2 | 94 | 3/2 |
GO_MF_EXT | 4070 | 61/34 | 1822 | 61/34 |
MOP | 240 | 4/2 | 101 | 3/2 |
MOP_EXT | 386 | 6/2 | 111 | 4/2 |
NCBITaxon | 7362 | 110/90 | 3101 | 103/90 |
NCBITaxon_EXT | 7592 | 113/97 | 3219 | 107/97 |
PR | 17,038 | 254/198 | 6409 | 214/198 |
PR_EXT | 19,862 | 296/246 | 7932 | 264/246 |
SO | 8797 | 131/118 | 3446 | 115/118 |
SO_EXT | 24,955 | 372/341 | 9136 | 305/341 |
UBERON | 12,269 | 183/130 | 6551 | 218/130 |
UBERON_EXT | 14,910 | 223/165 | 7416 | 247/165 |