BMC Bioinformatics

Table 10 F1 score results for detection of discontinuous spans for all algorithms tested against the core evaluation annotation set of the 30 held-out articles

From: Concept recognition as a machine translation problem

Ontology	Support	CRF	BiLSTM	BiLSTM-CRF	Char-Embeddings	BiLSTM-ELMo	BioBERT
ChEBI	14	0	0	0	0	0	0
CL	175	0.1176	0.1158	0.1171	0	0.0107	0.1818
GO_BP	272	0.0952	0	0.014	0	0.007	0.2742
GO_CC	14	0.1053	0	0	0.0526	0	0.3
PR	44	0	0	0	0	0	0.08
SO	45	0.0408	0	0	0	0	0.3
UBERON	118	0.04	0	0	0	0	0.0915

Note that there are no discontinuous spans in the GO_MF, MOP, and NCBITaxon sets

Back to article page

ISSN: 1471-2105

Contact us

General enquiries: journalsubmissions@springernature.com