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Table 11 F1 score results for detection of discontinuous spans for all algorithms tested against the core + extensions evaluation annotation set of the 30 held-out documents

From: Concept recognition as a machine translation problem

Ontology

Support

CRF

BioBERT

ChEBI_EXT

19

0

0

CL_EXT

175

0.1164

0.1608

GO_BP_EXT

287

0.085

0.2651

GO_CC_EXT

30

0.1579

0.3721

GO_MF_EXT

20

0

0

PR_EXT

44

0

0.1224

SO_EXT

72

0.1505

0.2979

UBERON_EXT

133

0.0485

0.2128

  1. Note that there are no discontinuous spans in the MOP_EXT and NCBITaxon_EXT sets
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BMC Bioinformatics

ISSN: 1471-2105

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