Table 13 BiLSTM tuning parameters and resulting tuning F1 scores that are used for the BiLSTM-CRF and Char-Embeddings models also
Ontology | Batch size | # Epochs | # Neurons | Time (h) | Memory (GBs) | F1 score (macro) | F1 score (micro) |
|---|---|---|---|---|---|---|---|
ChEBI | 53 | 10 | 12 | 99 | 6.5 | 0.67 | >Â 0.99 |
CL | 36 | 10 | 12 | 92 | 6.5 | 0.74 | >Â 0.99 |
GO_BP | 36 | 10 | 12 | 99 | 6.5 | 0.68 | >Â 0.99 |
GO_CC | 106 | 100 | 12 | 97 | 6.5 | 0.66 | >Â 0.99 |
GO_MF | 106 | 10 | 3 | 108 | 8.4 | 0.99 | >Â 0.99 |
MOP | 106 | 10 | 12 | 99 | 6.4 | 0.61 | >Â 0.99 |
NCBITaxon | 106 | 100 | 12 | 95 | 6.5 | 0.96 | >Â 0.99 |
PR | 36 | 10 | 12 | 95 | 6.5 | 0.71 | >Â 0.99 |
SO | 36 | 100 | 12 | 98 | 6.5 | 0.66 | >Â 0.99 |
UBERON | 18 | 10 | 12 | 97 | 6.5 | 0.68 | >Â 0.99 |