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Fig. 3 | BMC Bioinformatics

Fig. 3

From: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses

Fig. 3

Mandatory options in the main script. a The three required pieces of information the user provides are the reference genome, sample pattern, and expected strandness pattern present in all samples. The valid options are depicted horizontally to the right in this figure. b An example of a full command is shown- in this case, a test run on an SGE scheduler without docker is also specified

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BMC Bioinformatics

ISSN: 1471-2105

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