Table 1 Mismatch and phase-switch error rates of different sequencing technologies and haplotype assembly methods
Error class | Technology | Method | Mean error rate | Reduction DR2S (%) |
|---|---|---|---|---|
Mismatch | ONT | DR2S | 0.00398 | 0 |
HapCUT2 | 0.01033 | 61.47 | ||
WhatsHap | 0.00921 | 56.79 | ||
PacBio | DR2S | 0.00272 | 0 | |
HapCUT2 | 0.00457 | 40.48 | ||
WhatsHap | 0.00939 | 71.03 | ||
Switch | ONT | DR2S | 0.00089 | 0 |
HapCUT2 | 0.00378 | 76.46 | ||
WhatsHap | 0.00768 | 88.41 | ||
PacBio | DR2S | 0.00000 | 0 | |
HapCUT2 | 0.00543 | 100.00 | ||
WhatsHap | 0.00913 | 100.00 |