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Table 7 Evaluation on real data

From: Accel-Align: a fast sequence mapper and aligner based on the seed–embed–extend method

 

BWA-MEM

Bowtie2

Minimap2

Subread

AA-32-mer

AA-25-mer

Exec. time

1:32:02

1:48:09

00:31:24

00:56:24

00:11:46

00:19:20

Ti/Tv

2.71

2.73

2.73

2.85

2.78

2.76

Precision

0.961

0.967

0.967

0.980

0.972

0.968

Recall

0.952

0.948

0.952

0.901

0.942

0.946

F-score

0.956

0.957

0.959

0.939

0.957

0.958

F-score (SNP)

0.959

0.960

0.961

0.940

0.959

0.960

F-score (INDELs)

0.920

0.915

0.927

0.914

0.912

0.915

% Mapped

99.86%

99.16%

99.55%

91.43%

96.92%

98.67%