From: Accel-Align: a fast sequence mapper and aligner based on the seed–embed–extend method
BWA-MEM | Bowtie2 | Minimap2 | Subread | AA-32-mer | AA-25-mer | |
---|---|---|---|---|---|---|
Exec. time | 1:32:02 | 1:48:09 | 00:31:24 | 00:56:24 | 00:11:46 | 00:19:20 |
Ti/Tv | 2.71 | 2.73 | 2.73 | 2.85 | 2.78 | 2.76 |
Precision | 0.961 | 0.967 | 0.967 | 0.980 | 0.972 | 0.968 |
Recall | 0.952 | 0.948 | 0.952 | 0.901 | 0.942 | 0.946 |
F-score | 0.956 | 0.957 | 0.959 | 0.939 | 0.957 | 0.958 |
F-score (SNP) | 0.959 | 0.960 | 0.961 | 0.940 | 0.959 | 0.960 |
F-score (INDELs) | 0.920 | 0.915 | 0.927 | 0.914 | 0.912 | 0.915 |
% Mapped | 99.86% | 99.16% | 99.55% | 91.43% | 96.92% | 98.67% |