Feature/Dataset | ca1 | ce1 | ce2 | h1 | h2 | h3 | m1 | m2 | Mean |
---|---|---|---|---|---|---|---|---|---|
Number of GU bp within the seed\(^{n}\) | 100* | 87* | 95* | 29* | 40* | 100* | 28 | 100* | 72 |
bp in the 1st nt of the seed\(^{b}\) | 63* | 79 | 34* | 70* | 25* | 30* | 27 | 85* | 52 |
Number of GU bp within the site\(^{n}\) | 42* | 71* | 32* | 100* | 19 | 53* | 35* | 28* | 48 |
Proportion of G in mRNA at the site region\(^{n}\) | 12 | 74* | 12 | 12 | 36* | 33* | 100* | 37* | 39 |
Duplex minimum free energy\(^{n}\) | 13* | 45 | 11 | 10 | 100* | 19 | 35* | 52* | 36 |
Number of bp at location 2–7\(^n\) | 42* | 33 | 100* | 12 | 18 | 36* | 13 | 18 | 34 |
Proportion of GG in mRNA at the site region\(^{n}\) | 30* | 21 | 10 | 12 | 7 | 30* | 79* | 26* | 27 |
bp in the 4th nt of the seed \(^{b}\) | 8 | 100* | 21 | 10 | 11 | 16 | 2 | 12 | 22 |
Number of bulges outside the seed\(^{n}\) | 3 | 60* | 6 | 25* | 32* | 9 | 9 | 8 | 19 |
bp in the 2nd nt of the seed \(^{b}\) | 8 | 42 | 37* | 7 | 11 | 13 | 15 | 6 | 17 |
bp in the 5th nt of the seed \(^{b}\) | 12 | 27 | 14 | 14 | 6 | 15 | 29* | 12 | 16 |
Number of GC bp within the seed \(^{n}\) | 7 | 22 | 24* | 18* | 12 | 13 | 11 | 12 | 15 |
Number of GC bp outside the seed\(^{n}\) | 4 | 27 | 11 | 10 | 27* | 8 | 6 | 5 | 12 |
Accessibility (nt = 21, len = 10)\(^{n}\) | 9 | 19 | 7 | 6 | 25 | 7 | 12 | 7 | 11 |
minimum free energy of the target site + 50nt flanking regions\(^n\) | 8 | 11 | 6 | 7 | 8 | 11 | 36* | 6 | 11 |
Number of mismatches inside the seed \(^n\) | 4 | 3 | 15 | 19* | 0 | 13 | 2 | 9 | 8 |