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Table 1 Metrics on the human blood dendritic cell dataset

From: SSBER: removing batch effect for single-cell RNA sequencing data

 

Seurat

Harmony

SSBER

LIGER

iLISI

1.5804

1.4912

1.4125

1.342

cLISI

1.3951

1.1733

1.1652

1.4322

ARI

0.707

0.7806

0.8496

0.6824

ASW_batch

0.064

0.037

0.031

0.059

ASW_celltype

0.186

0.336

0.395

0.168

Isolated label

0.387

0.416

0.623

0.327

Cell cycle

0.473

0.636

0.583

0.450

HVG

0.613

 

0.624

 
  1. Bold represents the best indicator among four algorithms
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BMC Bioinformatics

ISSN: 1471-2105

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