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Table 5 Metrics on the mouse retina dataset

From: SSBER: removing batch effect for single-cell RNA sequencing data

  Seurat Harmony SSBER LIGER
iLISI 1.166076 1.200744 1.146624 1.17424
cLISI 1.054624 1.36209 1.044166 1.2365
ARI 0.6525991 0.53935 0.850938 0.54793
ASW_batch 0.142 0.145 0.148 0.184
ASW_celltype 0.673 0.684 0.765 0.703
Isolated label 0.592 0.647 0.783 0.618
Cell cycle 0.521 0.587 0.556 0.538
HVG 0.529   0.582  
  1. Bold represents the best indicator among four algorithms