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Table 4 ACKR1 alleles in the 1000GP and 3 Neanderthal samples

From: Cataloguing experimentally confirmed 80.7 kb-long ACKR1 haplotypes from the 1000 Genomes Project database

Haplotype

Observations

Nucleotides position*

Length (base pairs)

 

Species

Population†

n

c.-67 T > C

c.21 + 115 T > C

c.21 + 235 T > C

c.125G > A

 

NG_011626.3‡

H. sapiens

NA

NA

T

T

T

G

1,626

HAP897

H. sapiens

ACB

1

C

C

T

A

2,032

HAP899

H. sapiens

LWK

1

C

C

T

A

1,978

Chagyrskaya

H. neanderthalensis

NA

1

T

C

T

A

NA

Altai

H. neanderthalensis

NA

1

T

C

T

A

NA

Vindija

H. neanderthalensis

NA

1

T

C

Y

A

NA

  1. *Nucleotide positions are shown according to the human reference sequence (NG_011626.3) and defined using the first nucleotide of the coding sequence (CDS) of the NM_002036.2 isoform as nucleotide position 1. Only variant positions with respect to the 2,032 nucleotides of the HAP897 are listed
  2. †ACB = African Caribbeans in Barbados; LWK = Luhya in Webuye, Kenya
  3. ‡ACKR1 reference allele per ISBT [95]
  4. NA, not applicable; Y = T or C
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BMC Bioinformatics

ISSN: 1471-2105

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