From: Capsule-LPI: a LncRNA–protein interaction predicting tool based on a capsule network
Feature Combinations | AUC (%) | AUPRC (%) | Accuracy (%) | Sensitivity (%) | Precision (%) | F-value (%) |
---|---|---|---|---|---|---|
SF (Sequence feature) | \(94.16\pm 0.79\) | \(89.99\pm 1.66\) | \(90.78\pm 0.74\) | \(87.48\pm 1.20\) | \(95.20\pm 0.59\) | \(91.17\pm 0.65\) |
Mtf (Motif information) | \(87.97\pm 2.37\) | \(82.01\pm 4.70\) | \(85.20\pm 1.28\) | \(78.99\pm 1.67\) | \(96.00\pm 0.73\) | \(86.66\pm 1.04\) |
PC (Physicochemical) | \(93.89\pm 0.72\) | \(90.66\pm 1.47\) | \(88.99\pm 1.07\) | \(83.15\pm 1.28\) | \(\mathbf{97}.83 \pm \mathbf{0}.97\) | \(89.89\pm 0.93\) |
SS (Secondary structure) | \(89.46\pm 2.38\) | \(85.35\pm 4.98\) | \(83.68\pm 1.60\) | \(78.59\pm 1.79\) | \(92.67\pm 2.32\) | \(85.03\pm 1.42\) |
SF + Mtf | \(94.43\pm 0.89\) | \(91.37\pm 1.43\) | \(91.03\pm 1.03\) | \(87.33\pm 1.64\) | \(96.03\pm 0.85\) | \(91.46\pm 0.91\) |
SF + PC | \(95.33\pm 0.63\) | \(93.42\pm 0.93\) | \(91.49\pm 1.02\) | \(87.76\pm 1.71\) | \(96.48\pm 0.93\) | \(91.90\pm 0.90\) |
SF + SS | \(94.79\pm 0.77\) | \(92.31\pm 1.41\) | \(90.83\pm 0.99\) | \(86.95\pm 1.27\) | \(96.09\pm 1.00\) | \(91.29\pm 0.91\) |
Mtf + PC | \(94.01\pm 0.80\) | \(90.82\pm 1.34\) | \(89.00\pm 1.12\) | \(83.24\pm 1.60\) | \(97.74\pm 1.35\) | \(89.89\pm 0.97\) |
Mtf + SS | \(91.37\pm 1.30\) | \(89.45\pm 1.83\) | \(84.79\pm 1.10\) | \(77.96\pm 1.44\) | \(97.08\pm 0.74\) | \(86.46\pm 0.83\) |
PC + SS | \(94.12\pm 0.61\) | \(91.66\pm 0.60\) | \(89.12\pm 1.02\) | \(83.53\pm 1.19\) | \(97.50\pm 1.12\) | \(89.97\pm 0.91\) |
Mtf + PC + SS | \(94.13\pm 0.81\) | \(91.14\pm 1.55\) | \(89.02\pm 1.18\) | \(84.14\pm 1.70\) | \(96.24\pm 2.12\) | \(89.76\pm 1.09\) |
SF + PC + SS | \(95.23\pm 0.65\) | \(93.17\pm 0.96\) | \(91.41\pm 1.02\) | \(86.94\pm 1.43\) | \(97.48\pm 0.71\) | \(91.90\pm 0.91\) |
SF + Mtf + SS | \(94.73\pm 0.57\) | \(92.21\pm 0.86\) | \(90.75\pm 0.82\) | \(86.98\pm 1.44\) | \(95.90\pm 0.87\) | \(91.21\pm 0.71\) |
SF + Mtf + PC | \(\mathbf{95}.42 \pm \mathbf{0}.51\) | \(93.27\pm 1.00\) | \(91.62\pm 0.80\) | \(\mathbf{88}.46 \pm \mathbf{1}.46\) | \(95.79\pm 0.98\) | \(91.96\pm 0.71\) |
SF + Mtf + PC + SS | \(95.31\pm 0.41\) | \(\mathbf{93}.30 \pm \mathbf{0}.92\) | \(\mathbf{91}.66 \pm \mathbf{0}.86\) | \(88.15\pm 0.86\) | \(96.25\pm 0.90\) | \(\mathbf{92}.02 \pm \mathbf{0}.82\) |