Table 3 Comparison of performances for predicting lncRNA–protein interaction by Capsule-LPI and other tools under 5-fold cross validation
From: Capsule-LPI: a LncRNA–protein interaction predicting tool based on a capsule network
Tools | Sensitivity (%) | Precision (%) | F-value (%) |
|---|---|---|---|
RPISeq(RF) | \(\mathbf{99}.1 \pm \mathbf{0}.2\) | \(50.1\pm 0.1\) | \(66.5\pm 0.1\) |
RPISeq(SVM) | \(93.5\pm 0.7\) | \(50.2\pm 0.2\) | \(65.3\pm 0.4\) |
lncPro | \(80.3\pm 0.9\) | \(52.2\pm 0.6\) | \(63.2\pm 0.4\) |
RPI-pred | \(88.0\pm 0.3\) | \(49.8\pm 0.6\) | \(63.6\pm 0.5\) |
rpiCool | \(92.0\pm 0.8\) | \(83.3\pm 0.8\) | \(87.5\pm 0.6\) |
IPMiner | \(89.8\pm 1.1\) | \(85.6\pm 0.7\) | \(87.6\pm 0.6\) |
LncADeep | \(97.0\pm 0.5\) | \(85.4\pm 0.8\) | \(90.8\pm 0.4\) |
Capsule-LPI | \(97.6\pm 0.6\) | \(\mathbf{87}.3 \pm \mathbf{0}.2\) | \(\mathbf{92}.2 \pm \mathbf{0}.3\) |