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Table 5 Sensitivity and precision achieved by different methods using AMRFinderPlus calls made on assemblies of 763 read sets and the corresponding finished assembly in FDA-ARGOS set

From: SAUTE: sequence assembly using target enrichment

Set True False False Sensitivity Precision
positive positive negative   
SAUTE default 2801 575 22 0.99 0.83
SAUTE low 2803 833 20 0.99 0.77
SKESA 2674 308 149 0.95 0.90
SKESA + SAUTE default 2801 577 22 0.99 0.83
SKESA + SAUTE low 2803 834 20 0.99 0.77
SPAdes 2716 794 107 0.96 0.77
plasmidSPAdes 915 362 1908 0.32 0.72
SPAdes + plasmidSPAdes 2720 809 103 0.96 0.77
Cluster 2756 1209 67 0.98 0.70
SPAligner 2738 925 85 0.97 0.75