SAUTE: sequence assembly using target enrichment

BMC Bioinformatics

Table 5 Sensitivity and precision achieved by different methods using AMRFinderPlus calls made on assemblies of 763 read sets and the corresponding finished assembly in FDA-ARGOS set

Set	True	False	False	Sensitivity	Precision
Set	positive	positive	negative
SAUTE default	2801	575	22	0.99	0.83
SAUTE low	2803	833	20	0.99	0.77
SKESA	2674	308	149	0.95	0.90
SKESA + SAUTE default	2801	577	22	0.99	0.83
SKESA + SAUTE low	2803	834	20	0.99	0.77
SPAdes	2716	794	107	0.96	0.77
plasmidSPAdes	915	362	1908	0.32	0.72
SPAdes + plasmidSPAdes	2720	809	103	0.96	0.77
Cluster	2756	1209	67	0.98	0.70
SPAligner	2738	925	85	0.97	0.75

ISSN: 1471-2105