A novel essential protein identification method based on PPI networks and gene expression data

BMC Bioinformatics

Table 1 SN, SP, FPR, PPV, NPV, F-measure, ACC and MCC of Various Methods on Total Ranked Proteins

Methods	SN	SP	FPR	PPV	NPV	F- measure	ACC	MCC
Yeast data
JDC	0.4604	0.8403	0.1597	0.4604	0.8403	0.4604	0.7535	0.3007
DC	0.4002	0.8217	0.1783	0.4002	0.8217	0.4002	0.7251	0.2219
BC	0.3505	0.8069	0.1931	0.3505	0.8069	0.3505	0.7023	0.1574
CC	0.3548	0.8082	0.1918	0.3548	0.8082	0.3548	0.7043	0.163
SC	0.3676	0.812	0.188	0.3676	0.812	0.3676	0.7102	0.1796
EC	0.3676	0.812	0.188	0.3676	0.812	0.3676	0.7102	0.1796
IC	0.401	0.822	0.178	0.401	0.822	0.401	0.7255	0.223
NC	0.4353	0.8321	0.1679	0.4353	0.8321	0.4353	0.7412	0.2674
PeC	0.4036	0.8227	0.1773	0.4036	0.8227	0.4036	0.7267	0.2263
WDC	0.4576	0.839	0.161	0.458	0.8388	0.4578	0.7516	0.2967

Methods	SN	SP	FPR	PPV	NPV	F-measure	ACC	MCC
E.coli data
JDC	0.2835	0.9264	0.0736	0.2835	0.9264	02,835	0.8665	02,099
DC	0.2559	0.9236	0.0764	0.2559	0.9236	0.2599	0.8614	0.1795
BC	0.2441	0.9224	0.0776	0.2441	0.9224	0.2441	0.8592	0.2665
CC	0.2441	0.9224	0.0776	0.2441	0.9224	0.2441	0.8592	0.1665
SC	0.2283	0.9207	0.0793	0.2283	0.9207	0.2283	0.8562	0.1491
EC	0.2283	0.9207	0.0793	0.2283	0.9207	0.2283	0.8562	0.1491
IC	0.2559	0.9236	0.0764	0.2559	0.9236	0.2559	0.8614	0.1795
NC	0.2165	0.9195	0.0805	0.2165	0.9195	0.2165	0.8541	0.1361
PeC	0.2441	0.9204	0.0776	0.2441	0.9224	0.2441	0.8592	0.1665
WDC	0.2689	0.922	0.078	0.2689	0.922	0.2689	0.859	0.1909

ISSN: 1471-2105