Table 4 Accuracy of different methods for simulated reads with 12× coverage on chromosome 1
From: SVNN: an efficient PacBio-specific pipeline for structural variations calling using neural networks
Method | DEL recall (%) | INS recall (%) | INV recall (%) | DUP recall (%) | Overall recall (%) | FDR (%) |
|---|---|---|---|---|---|---|
Baseline method | 71.2 | 41.1 | 92 | 68 | 64 | 3.4 |
NGMLR-Sniffles | 67.7 | 13.8 | 84 | 70 | 52.6 | 2.8 |
Most sensitive method | 85.8 | 49.5 | 95 | 90 | 75.5 | 4.6 |
SVNN | 83.3 | 45.5 | 95 | 88 | 73.3 | 4 |