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Table 5 Accuracy of different methods for real reads with 12× coverage on chromosomes 21 and 22

From: SVNN: an efficient PacBio-specific pipeline for structural variations calling using neural networks

Method

DEL recall (%)

INS recall (%)

Overall recall (%)

Baseline method

70

60

65

NGMLR-Sniffles

70

40

55

Most sensitive method

80

70

75

SVNN

80

70

75