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Fig. 3 | BMC Bioinformatics

Fig. 3

From: 2-kupl: mapping-free variant detection from DNA-seq data of matched samples

Fig. 3

IGV views of variant calls in TCGA-PRAD WES dataset. The two central tracks show aligned reads from the tumor (top) and normal (bottom) WES library. The lower track shows gene annotation and 2-kupl contigs. a A likely false-positive call by 2-kupl at a position of low mapping quality, b A likely true positive within a repeat region. Reads in transparent color have low MAPQ (mapping quality) values (<10)

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