From: 2-kupl: mapping-free variant detection from DNA-seq data of matched samples
indels | 2-kupl | DiscoSNP++ | Lancet | GATK-MuTect2 |
---|---|---|---|---|
True positive | 42 | 29 | 40 | 49 |
False positive | 16 | 1 | 44 | 26 |
False negative | 39 | 52 | 41 | 32 |
Recall | 0.52 | 0.36 | 0.49 | 0.60 |
FDR | 0.27 | 0.03 | 0.52 | 0.35 |
Precision | 0.72 | 0.97 | 0.47 | 0.65 |
F1 score | 0.60 | 0.52 | 0.48 | 0.63 |