From: 2-kupl: mapping-free variant detection from DNA-seq data of matched samples
mutations | 2-kupl | GATK-MuTect2 |
---|---|---|
True positive | 13835 | 13920 |
False positive | 1248 | 30 |
False negative | 2220 | 2135 |
Recall | 0.86 | 0.86 |
FDR | 0.08 | 0.002 |
Precision | 0.91 | 0.99 |
F1 score | 0.89 | 0.93 |